Software Publications Software People Research Home molecular evolution, phylogenetics and epidemiology Software Development Latest Software: TempEst Explore temporal signal and clocklikeness in trees (formerly Path-O-Gen) Latest version: v1.5.3 FigTree Produce high-quality figures of phylogenetic trees Latest version: v1.4.4 TreeStat A program that calculates summary statistics of a set of trees Latest version: v1.2 BEAST BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. Latest version: v1.10.1 Tracer A program for analysing results from Bayesian MCMC programs such as BEAST & MrBayes Latest version: v1.7.1 Se-Al A manual sequence alignment editor. Latest version: v2.0a11 Seq-Gen An application for the Monte Carlo simulation of DNA and amino acid sequence evolution along phyloge(...) Latest version: v1.3.4 Latest Updates: 2019-06-13 - TempEst Explore temporal signal and clocklikeness in trees (formerly Path-O-Gen) 2018-11-25 - FigTree Produce high-quality figures of phylogenetic trees 2018-08-01 - BEAST BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. 2018-05-01 - Tracer A program for analysing results from Bayesian MCMC programs such as BEAST & MrBayes 2017-09-17 - Seq-Gen An application for the Monte Carlo simulation of DNA and amino acid sequence evolution along phyloge(...) 2008-11-29 - TreeStat A program that calculates summary statistics of a set of trees 2002-12-01 - Phylogen 2002-10-04 - TreeEdit Download stats RSS Feed BEAST BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. Current version: v1.10.1 Description: BEAST, Bayesian Evolutionary Analysis Sampling Trees, is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. The program is orientated towards (strict and relaxed) molecular clock analyses... Further information and downloads... FigTree Produce high-quality figures of phylogenetic trees Current version: v1.4.4 Description: FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures. As with most of my programs, it was written for my own needs so may not be as polished and feature-complete as a commercial program... Further information and downloads... Se-Al A manual sequence alignment editor. Current version: v2.0a11 Description: WARNING: Se-Al will not run on Mac OS X 10.7 Due to the lack of support for older PPC code (via the 'Rosetta' system present in older versions)... Further information and downloads... Seq-Gen An application for the Monte Carlo simulation of DNA and amino acid sequence evolution along phyloge(...) Current version: v1.3.4 Description: Seq-Gen is a program that will simulate the evolution of nucleotide or amino acid sequences along a phylogeny, using common models of the substitution process... Further information and downloads... TempEst Explore temporal signal and clocklikeness in trees (formerly Path-O-Gen) Current version: v1.5.3 Description: TempEst is a tool for investigating the temporal signal and 'clocklikeness' of molecular phylogenies. It can read and analyse contemporaneous trees (where all sequences have been collected at the same time) and dated-tip trees (where sequences have been collected at different dates)... Further information and downloads... Tracer A program for analysing results from Bayesian MCMC programs such as BEAST & MrBayes Current version: v1.7.1 Description: Tracer is a program for analysing the trace files generated by Bayesian MCMC runs (that is, the continuous parameter values sampled from the chain). It can be used to analyse runs of BEAST, MrBayes, LAMARC and possibly other MCMC programs. Although Tracer can be used with programs other than BEAST, users are strongly advised to join the BEAST mailing-list... Further information and downloads... TreeStat A program that calculates summary statistics of a set of trees Current version: v1.2 Description: TreeStat is an application that can process a set of trees in a PHYLIP or NEXUS format tree file and calculate a number of summary statistics for each... Further information and downloads... The following programs are now no longer supported This may mean they no longer run on newer computers or the analyses have been superceded by other software Path-O-Gen Explore temporal signal and clocklikeness in trees Description: Path-O-Gen has been renamed TempEst. Please click here to be redirected to the TempEst page... Further information and downloads... Phylogen Current version: v1.1 Description: .. Further information and downloads... TreeEdit Current version: v1.0a10 Description: .. Further information and downloads... tree.bio.ed.ac.uk > software Andrew Rambaut, 2007
